By Sren Baldi Pierre;Brunak
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Extra info for Bioinformatics The Machine Learning Approach
Mol Ecol 21:5280–5298 Morgan MT (2001) Transposable element number in mixed mating populations. Genet Res 77:261–275 Muyle A, Zemp N, Deschamps C et al (2012) Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes. PLoS Biol 10:e1001308 Naithani S, Chookajorn T, Ripoll DR, Nasrallah JB (2007) Structural modules for receptor dimerization in the Slocus receptor kinase extracellular domain. Proc Natl Acad Sci USA 104:12211–12216 Nasrallah ME, Liu P, Nasrallah JB (2002) Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A.
Vulgaris). However they found no difference in a second comparison involving the dioecious S. otites and the gynodioecious S. nutans. They suggest that the discrepancy could be explained by differences in the timescale of the two comparisons, with a much more recent evolution of dioecy in S. otites as compared to the Melandrium section, so that the time is too short for the evolution of genomic differences (Kafer et al. 2013). This suggestion is confirmed by another study that showed the occurrence of shared polymorphism at nuclear and mitochondrial genes between S.
Empirical results are still limited. Morgan (2001) reviewed studies on Ty1 copia-like elements for a number of species pairs and concluded that copy number is reduced overall in selfers as compared to outcrossers. 25 Tam et al. (2007), observed lower frequencies of insertion of copia-like elements in selfing as compared to outcrossing species of tomato wild relatives, but no differences in current copy numbers. In Arabidopsis, copy number for a vast majority of TE families was found to be lower in the selfer A.