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Download Bioinformatics Research and Applications: 11th International by Robert Harrison, Yaohang Li, Ion Măndoiu PDF

By Robert Harrison, Yaohang Li, Ion Măndoiu

This booklet constitutes the refereed court cases of the eleventh foreign Symposium on Bioinformatics examine and purposes, ISBRA 2015, held in Norfolk, VA, united states, in June 2015. The 34 revised complete papers and 14 two-page papers incorporated during this quantity have been conscientiously reviewed and chosen from ninety eight submissions. The papers conceal a variety of subject matters in bioinformatics and computational biology and their applications.

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Read or Download Bioinformatics Research and Applications: 11th International Symposium, ISBRA 2015 Norfolk, USA, June 7-10, 2015 Proceedings PDF

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Extra resources for Bioinformatics Research and Applications: 11th International Symposium, ISBRA 2015 Norfolk, USA, June 7-10, 2015 Proceedings

Sample text

This motivates one to study CPM. However, from practical consideration, the biologists are more interested in locating the approximate occurrences of one of the rotations of P in T . , the approximate version of the problem. 2 Our Contribution The main contribution of this paper is a fast and efficient algorithm for the approximate circular pattern matching problem based on some filtering techniques. The main idea behind our approach is quite simple and intuitive. We employ a number of simple and effective filters to preprocess the given pattern and the text.

So, we briefly discuss this concept here. Suppose we have an algorithm A to solve a problem B. Now suppose that Strue represents the set of true solutions for the problem B. Further suppose that A computes the set SA as the set of solutions for B. Now assume that Strue = SA . Then, the set of false positives can be computed as follows: SA \ Strue . In other words, the set computed by A contains some solutions that are not true solutions for problem B. , positive). On the other hand, the set of false negatives can be computed as follows: Strue \ SA .

International Journal of Data Mining and Bioinformatics 3, 346-361 (2009) 42. : Cyclic coordinate descent: A robotics algorithm for protein loop closure. Protein Science 12, 963-972 (2003) 43. : Full cyclic coordinate descent: Solving the protein loop closure problem in Cα space. BMC Bioinformatics 6, 159 (2005) 44. : GTPase activation of elongation factor EF-Tu by the ribosome during decoding. EMBO J 28, 755-765 (2009) 45. : EMAN: Semi-automated software for high resolution single particle reconstructions.

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