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By You Ch.H.

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Extra info for Application of Graph Based Data Mining to Biological Networks

Sample text

As the view of supervised learning, this classification is successful. However this case is not the general case. Ortholog is a gene that has the same function and origin in different species. Some biological networks of which ortholog research is completed has ortholog entry. Even though Subdue can distinguish easily, it does not generate special biological meaning.

The name of a set consists of two parts, XP and XN, which represent the network name of the positive examples and negative examples respectively. The number of examples represents a number of positive and negative examples. 1 represents source groups of species. 1. ) 00240 00230 17/17 00230 00240 17/17 00300 00310 9/16 00310 00300 16/9 00520 00530 14/17 00530 00520 17/14 00061 00010 15/17 00010 00900 44/41 00240 00230 45/45 00251 00010 45/44 00010 00510 31/44 00010 00230 44/45 00061 00010 44/41 00010 00900 149/143 00061 00100 140/149 Source (Species group) Eukaryote Eukaryote Eukaryote Eukaryote Eukaryote Eukaryote Eukaryote 45 Set 45 Set 45 Set 45 Set 45 Set 45 Set 150 Set 150 Set set, 45 Set and 150 Set.

Subtype node value and Subvalue node value of the Relation element [3] Subtype value compound hidden compound activation inhibition expression repression indirect effect state change binding/association dissociation phosphorylation dephosphorylation glycosylation ubiquitination methylation Subvalue value link to Entry for compound link to Entry for hidden compound −− > −−| −− > −−| .. > ... −−− −+− +p −p +g +u +m ECrel PPrel GErel ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ ∗ not available. Map which is the Id of the map entry is specified if this entry appears in another pathway map [3].

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